Index

_

__call__() (pytomography.algorithms.dip_recon.DIPRecon method) (pytomography.algorithms.DIPRecon method) (pytomography.algorithms.fbp.FilteredBackProjection method) (pytomography.algorithms.FilteredBackProjection method) (pytomography.algorithms.KEM method) (pytomography.algorithms.MLEM method) (pytomography.algorithms.PGAAMultiBedSPECT method) (pytomography.algorithms.preconditioned_gradient_ascent.KEM method) (pytomography.algorithms.preconditioned_gradient_ascent.MLEM method) (pytomography.algorithms.preconditioned_gradient_ascent.PGAAMultiBedSPECT method) (pytomography.algorithms.preconditioned_gradient_ascent.PreconditionedGradientAscentAlgorithm method) (pytomography.algorithms.PreconditionedGradientAscentAlgorithm method) (pytomography.priors.AnatomyNeighbourWeight method) (pytomography.priors.EuclideanNeighbourWeight method) (pytomography.priors.nearest_neighbour.AnatomyNeighbourWeight method) (pytomography.priors.nearest_neighbour.EuclideanNeighbourWeight method) (pytomography.priors.nearest_neighbour.NearestNeighbourPrior method) (pytomography.priors.nearest_neighbour.NeighbourWeight method) (pytomography.priors.nearest_neighbour.TopNAnatomyNeighbourWeight method) (pytomography.priors.NearestNeighbourPrior method) (pytomography.priors.NeighbourWeight method) (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) (pytomography.priors.TopNAnatomyNeighbourWeight method) (pytomography.transforms.shared.filters.GaussianFilter method) (pytomography.transforms.shared.GaussianFilter method) (pytomography.utils.fourier_filters.HammingFilter method) (pytomography.utils.fourier_filters.RampFilter method) (pytomography.utils.HammingFilter method) (pytomography.utils.RampFilter method) __enter__() (pytomography.io.PET.prd.PrdExperimentReaderBase method) (pytomography.io.PET.prd.PrdExperimentWriterBase method) (pytomography.io.PET.prd.protocols.PrdExperimentReaderBase method) (pytomography.io.PET.prd.protocols.PrdExperimentWriterBase method) __eq__() (pytomography.io.PET.prd.CoincidenceEvent method) (pytomography.io.PET.prd.DateTime method) (pytomography.io.PET.prd.Detector method) (pytomography.io.PET.prd.ExamInformation method) (pytomography.io.PET.prd.Header method) (pytomography.io.PET.prd.Institution method) (pytomography.io.PET.prd.OutOfRangeEnum method) (pytomography.io.PET.prd.ScannerInformation method) (pytomography.io.PET.prd.Subject method) (pytomography.io.PET.prd.Time method) (pytomography.io.PET.prd.TimeBlock method) (pytomography.io.PET.prd.TimeFrameInformation method) (pytomography.io.PET.prd.TimeInterval method) (pytomography.io.PET.prd.types.CoincidenceEvent method) (pytomography.io.PET.prd.types.Detector method) (pytomography.io.PET.prd.types.ExamInformation method) (pytomography.io.PET.prd.types.Header method) (pytomography.io.PET.prd.types.Institution method) (pytomography.io.PET.prd.types.ScannerInformation method) (pytomography.io.PET.prd.types.Subject method) (pytomography.io.PET.prd.types.TimeBlock method) (pytomography.io.PET.prd.types.TimeFrameInformation method) (pytomography.io.PET.prd.types.TimeInterval method) (pytomography.io.PET.prd.UnionCase method) (pytomography.io.PET.prd.yardl_types.DateTime method) (pytomography.io.PET.prd.yardl_types.OutOfRangeEnum method) (pytomography.io.PET.prd.yardl_types.Time method) (pytomography.io.PET.prd.yardl_types.UnionCase method) __exit__() (pytomography.io.PET.prd.PrdExperimentReaderBase method) (pytomography.io.PET.prd.PrdExperimentWriterBase method) (pytomography.io.PET.prd.protocols.PrdExperimentReaderBase method) (pytomography.io.PET.prd.protocols.PrdExperimentWriterBase method) __hash__() (pytomography.io.PET.prd.DateTime method) (pytomography.io.PET.prd.OutOfRangeEnum method) (pytomography.io.PET.prd.yardl_types.DateTime method) (pytomography.io.PET.prd.yardl_types.OutOfRangeEnum method) __repr__() (pytomography.io.PET.prd.CoincidenceEvent method) (pytomography.io.PET.prd.DateTime method) (pytomography.io.PET.prd.Detector method) (pytomography.io.PET.prd.ExamInformation method) (pytomography.io.PET.prd.Header method) (pytomography.io.PET.prd.Institution method) (pytomography.io.PET.prd.OutOfRangeEnum method) (pytomography.io.PET.prd.ScannerInformation method) (pytomography.io.PET.prd.Subject method) (pytomography.io.PET.prd.Time method) (pytomography.io.PET.prd.TimeBlock method) (pytomography.io.PET.prd.TimeFrameInformation method) (pytomography.io.PET.prd.TimeInterval method) (pytomography.io.PET.prd.types.CoincidenceEvent method) (pytomography.io.PET.prd.types.Detector method) (pytomography.io.PET.prd.types.ExamInformation method) (pytomography.io.PET.prd.types.Header method) (pytomography.io.PET.prd.types.Institution method) (pytomography.io.PET.prd.types.ScannerInformation method) (pytomography.io.PET.prd.types.Subject method) (pytomography.io.PET.prd.types.TimeBlock method) (pytomography.io.PET.prd.types.TimeFrameInformation method) (pytomography.io.PET.prd.types.TimeInterval method) (pytomography.io.PET.prd.UnionCase method) (pytomography.io.PET.prd.yardl_types.DateTime method) (pytomography.io.PET.prd.yardl_types.OutOfRangeEnum method) (pytomography.io.PET.prd.yardl_types.Time method) (pytomography.io.PET.prd.yardl_types.UnionCase method) (pytomography.metadata.metadata.ObjectMeta method) (pytomography.metadata.metadata.ProjMeta method) (pytomography.metadata.ObjectMeta method) (pytomography.metadata.ProjMeta method) (pytomography.metadata.SPECT.spect_metadata.SPECTPSFMeta method) (pytomography.metadata.SPECT.SPECTPSFMeta method) __str__() (pytomography.io.PET.prd.CoincidenceEvent method) (pytomography.io.PET.prd.DateTime method) (pytomography.io.PET.prd.Detector method) (pytomography.io.PET.prd.ExamInformation method) (pytomography.io.PET.prd.Header method) (pytomography.io.PET.prd.Institution method) (pytomography.io.PET.prd.OutOfRangeEnum method) (pytomography.io.PET.prd.ScannerInformation method) (pytomography.io.PET.prd.Subject method) (pytomography.io.PET.prd.Time method) (pytomography.io.PET.prd.TimeBlock method) (pytomography.io.PET.prd.TimeFrameInformation method) (pytomography.io.PET.prd.TimeInterval method) (pytomography.io.PET.prd.types.CoincidenceEvent method) (pytomography.io.PET.prd.types.Detector method) (pytomography.io.PET.prd.types.ExamInformation method) (pytomography.io.PET.prd.types.Header method) (pytomography.io.PET.prd.types.Institution method) (pytomography.io.PET.prd.types.ScannerInformation method) (pytomography.io.PET.prd.types.Subject method) (pytomography.io.PET.prd.types.TimeBlock method) (pytomography.io.PET.prd.types.TimeFrameInformation method) (pytomography.io.PET.prd.types.TimeInterval method) (pytomography.io.PET.prd.UnionCase method) (pytomography.io.PET.prd.yardl_types.DateTime method) (pytomography.io.PET.prd.yardl_types.OutOfRangeEnum method) (pytomography.io.PET.prd.yardl_types.Time method) (pytomography.io.PET.prd.yardl_types.UnionCase method) __version__ (in module pytomography) _apply_dvf() (pytomography.transforms.shared.DVFMotionTransform method) (pytomography.transforms.shared.motion.DVFMotionTransform method) _backward_full() (pytomography.projectors.PET.petlm_system_matrix.PETLMSystemMatrix method) (pytomography.projectors.PET.PETLMSystemMatrix method) _CoincidenceEventConverter (class in pytomography.io.PET.prd.ndjson) _CoincidenceEventSerializer (class in pytomography.io.PET.prd.binary) _compute_attenuation_probability_projection() (pytomography.projectors.PET.petlm_system_matrix.PETLMSystemMatrix method) (pytomography.projectors.PET.PETLMSystemMatrix method) _compute_atteunation_probability_projection() (pytomography.projectors.PET.pet_sinogram_system_matrix.PETSinogramSystemMatrix method) (pytomography.projectors.PET.PETSinogramSystemMatrix method) _compute_callback() (pytomography.algorithms.dip_recon.DIPRecon method) (pytomography.algorithms.DIPRecon method) (pytomography.algorithms.KEM method) (pytomography.algorithms.PGAAMultiBedSPECT method) (pytomography.algorithms.preconditioned_gradient_ascent.KEM method) (pytomography.algorithms.preconditioned_gradient_ascent.PGAAMultiBedSPECT method) (pytomography.algorithms.preconditioned_gradient_ascent.PreconditionedGradientAscentAlgorithm method) (pytomography.algorithms.PreconditionedGradientAscentAlgorithm method)

_compute_kernel_size() (pytomography.transforms.SPECT.psf.SPECTPSFTransform method) (pytomography.transforms.SPECT.SPECTPSFTransform method) _compute_preconditioner() (pytomography.algorithms.OSMAPOSL method) (pytomography.algorithms.preconditioned_gradient_ascent.LinearPreconditionedGradientAscentAlgorithm method) (pytomography.algorithms.preconditioned_gradient_ascent.OSMAPOSL method) (pytomography.algorithms.preconditioned_gradient_ascent.PreconditionedGradientAscentAlgorithm method) (pytomography.algorithms.preconditioned_gradient_ascent.RBIEM method) (pytomography.algorithms.preconditioned_gradient_ascent.RBIMAP method) (pytomography.algorithms.PreconditionedGradientAscentAlgorithm method) (pytomography.algorithms.RBIEM method) (pytomography.algorithms.RBIMAP method) _compute_projections_mask() (pytomography.projectors.SPECT.spect_system_matrix.SPECTCompleteSystemMatrix method) (pytomography.projectors.SPECT.SPECTCompleteSystemMatrix method) _compute_sensitivity_projection() (pytomography.projectors.PET.petlm_system_matrix.PETLMSystemMatrix method) (pytomography.projectors.PET.PETLMSystemMatrix method) _compute_sensitivity_sinogram() (pytomography.projectors.PET.pet_sinogram_system_matrix.PETSinogramSystemMatrix method) (pytomography.projectors.PET.PETSinogramSystemMatrix method) _compute_system_matrix_components() (pytomography.projectors.SPECT.spect_system_matrix.SPECTCompleteSystemMatrix method) (pytomography.projectors.SPECT.SPECTCompleteSystemMatrix method) _compute_uncertainty_matrix() (pytomography.algorithms.preconditioned_gradient_ascent.LinearPreconditionedGradientAscentAlgorithm method) _configure_gaussian_model() (pytomography.transforms.SPECT.psf.SPECTPSFTransform method) (pytomography.transforms.SPECT.SPECTPSFTransform method) _configure_kernel_model() (pytomography.transforms.SPECT.psf.SPECTPSFTransform method) (pytomography.transforms.SPECT.SPECTPSFTransform method) _configure_manual_net() (pytomography.transforms.SPECT.psf.SPECTPSFTransform method) (pytomography.transforms.SPECT.SPECTPSFTransform method) _DetectorConverter (class in pytomography.io.PET.prd.ndjson) _DetectorSerializer (class in pytomography.io.PET.prd.binary) _end_stream() (pytomography.io.PET.prd._binary.BinaryProtocolWriter method) (pytomography.io.PET.prd._ndjson.NDJsonProtocolWriter method) (pytomography.io.PET.prd.PrdExperimentWriterBase method) (pytomography.io.PET.prd.protocols.PrdExperimentWriterBase method) _ExamInformationConverter (class in pytomography.io.PET.prd.ndjson) _ExamInformationSerializer (class in pytomography.io.PET.prd.binary) _fill_buffer() (pytomography.io.PET.prd._binary.CodedInputStream method) _finalize_callback() (pytomography.algorithms.PGAAMultiBedSPECT method) (pytomography.algorithms.preconditioned_gradient_ascent.PGAAMultiBedSPECT method) _get_affine_multifile() (in module pytomography.io.shared) (in module pytomography.io.shared.dicom) _get_affine_spect_projections() (in module pytomography.io.SPECT.dicom) _get_dtype_and_subarray_shape() (pytomography.io.PET.prd._binary.NDArraySerializerBase static method) (pytomography.io.PET.prd._ndjson.NDArrayConverterBase static method) _get_kernels() (pytomography.transforms.shared.filters.GaussianFilter method) (pytomography.transforms.shared.GaussianFilter method) _get_new_coordinates() (pytomography.transforms.shared.DVFMotionTransform method) (pytomography.transforms.shared.motion.DVFMotionTransform method) _get_normBP() (pytomography.likelihoods.Likelihood method) (pytomography.likelihoods.likelihood.Likelihood method) _get_object_initial() (pytomography.projectors.PET.petlm_system_matrix.PETLMSystemMatrix method) (pytomography.projectors.PET.PETLMSystemMatrix method) (pytomography.projectors.SPECT.spect_system_matrix.SPECTSystemMatrix method) (pytomography.projectors.SPECT.SPECTSystemMatrix method) (pytomography.projectors.system_matrix.SystemMatrix method) (pytomography.projectors.SystemMatrix method) _get_object_positions() (pytomography.projectors.SPECT.spect_system_matrix.SPECTCompleteSystemMatrix method) (pytomography.projectors.SPECT.SPECTCompleteSystemMatrix method) _get_old_coordinates() (pytomography.transforms.shared.DVFMotionTransform method) (pytomography.transforms.shared.motion.DVFMotionTransform method) _get_proj_positions() (pytomography.projectors.SPECT.spect_system_matrix.SPECTCompleteSystemMatrix method) (pytomography.projectors.SPECT.SPECTCompleteSystemMatrix method) _get_projection_subset() (pytomography.likelihoods.Likelihood method) (pytomography.likelihoods.likelihood.Likelihood method) _get_projections_from_single_file() (in module pytomography.io.SPECT.simind) _get_sigma() (pytomography.transforms.SPECT.psf.SPECTPSFTransform method) (pytomography.transforms.SPECT.SPECTPSFTransform method) _get_vol_ratio() (pytomography.transforms.shared.DVFMotionTransform method) (pytomography.transforms.shared.motion.DVFMotionTransform method) _get_xyz_sinogram_coordinates() (pytomography.projectors.PET.pet_sinogram_system_matrix.PETSinogramSystemMatrix method) (pytomography.projectors.PET.PETSinogramSystemMatrix method) _HeaderConverter (class in pytomography.io.PET.prd.ndjson) _HeaderSerializer (class in pytomography.io.PET.prd.binary) _InstitutionConverter (class in pytomography.io.PET.prd.ndjson) _InstitutionSerializer (class in pytomography.io.PET.prd.binary) _is_current_array_trivially_serializable() (pytomography.io.PET.prd._binary.NDArraySerializerBase method) _linear_preconditioner_factor() (pytomography.algorithms.BSREM method) (pytomography.algorithms.OSEM method) (pytomography.algorithms.preconditioned_gradient_ascent.BSREM method) (pytomography.algorithms.preconditioned_gradient_ascent.LinearPreconditionedGradientAscentAlgorithm method) (pytomography.algorithms.preconditioned_gradient_ascent.OSEM method) _listmodeTOF_to_sinogramTOF() built-in function _listmodeTOF_to_sinogramTOF() (in module pytomography.io.PET.shared) _MIN_NUMPY_VERSION (in module pytomography.io.PET.prd) _missing_() (pytomography.io.PET.prd.OutOfRangeEnum class method) (pytomography.io.PET.prd.yardl_types.OutOfRangeEnum class method) _mk_get_dtype() (in module pytomography.io.PET.prd.types) _NANOSECONDS_PER_DAY (pytomography.io.PET.prd.Time attribute) (pytomography.io.PET.prd.yardl_types.Time attribute) _pair_contribution() (pytomography.priors.nearest_neighbour.NearestNeighbourPrior method) (pytomography.priors.NearestNeighbourPrior method) _parse_version() (in module pytomography.io.PET.prd) _raise_unexpected_state() (pytomography.io.PET.prd.PrdExperimentReaderBase method) (pytomography.io.PET.prd.PrdExperimentWriterBase method) (pytomography.io.PET.prd.protocols.PrdExperimentReaderBase method) (pytomography.io.PET.prd.protocols.PrdExperimentWriterBase method) _read() (pytomography.io.PET.prd._binary.RecordSerializer method) (pytomography.io.PET.prd._ndjson.NDArrayConverterBase method) _read_data() (pytomography.io.PET.prd._binary.NDArraySerializerBase method) _read_header() (pytomography.io.PET.prd.binary.BinaryPrdExperimentReader method) (pytomography.io.PET.prd.BinaryPrdExperimentReader method) (pytomography.io.PET.prd.ndjson.NDJsonPrdExperimentReader method) (pytomography.io.PET.prd.NDJsonPrdExperimentReader method) (pytomography.io.PET.prd.PrdExperimentReaderBase method) (pytomography.io.PET.prd.protocols.PrdExperimentReaderBase method) _read_json_line() (pytomography.io.PET.prd._ndjson.NDJsonProtocolReader method) _read_time_blocks() (pytomography.io.PET.prd.binary.BinaryPrdExperimentReader method) (pytomography.io.PET.prd.BinaryPrdExperimentReader method) (pytomography.io.PET.prd.ndjson.NDJsonPrdExperimentReader method) (pytomography.io.PET.prd.NDJsonPrdExperimentReader method) (pytomography.io.PET.prd.PrdExperimentReaderBase method) (pytomography.io.PET.prd.protocols.PrdExperimentReaderBase method) _ScannerInformationConverter (class in pytomography.io.PET.prd.ndjson) _ScannerInformationSerializer (class in pytomography.io.PET.prd.binary) _set_n_subsets() (pytomography.algorithms.preconditioned_gradient_ascent.PreconditionedGradientAscentAlgorithm method) (pytomography.algorithms.PreconditionedGradientAscentAlgorithm method) (pytomography.likelihoods.Likelihood method) (pytomography.likelihoods.likelihood.Likelihood method) _state_to_method_name() (pytomography.io.PET.prd.PrdExperimentReaderBase method) (pytomography.io.PET.prd.PrdExperimentWriterBase method) (pytomography.io.PET.prd.protocols.PrdExperimentReaderBase method) (pytomography.io.PET.prd.protocols.PrdExperimentWriterBase method) _SubjectConverter (class in pytomography.io.PET.prd.ndjson) _SubjectSerializer (class in pytomography.io.PET.prd.binary) _T (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) _TimeBlockConverter (class in pytomography.io.PET.prd.ndjson) _TimeBlockSerializer (class in pytomography.io.PET.prd.binary) _TimeFrameInformationConverter (class in pytomography.io.PET.prd.ndjson) _TimeFrameInformationSerializer (class in pytomography.io.PET.prd.binary) _TimeIntervalConverter (class in pytomography.io.PET.prd.ndjson) _TimeIntervalSerializer (class in pytomography.io.PET.prd.binary) _wrap_iterable() (pytomography.io.PET.prd.PrdExperimentReaderBase method) (pytomography.io.PET.prd.protocols.PrdExperimentReaderBase method) _write() (pytomography.io.PET.prd._binary.RecordSerializer method) _write_data() (pytomography.io.PET.prd._binary.NDArraySerializerBase method) _write_header() (pytomography.io.PET.prd.binary.BinaryPrdExperimentWriter method) (pytomography.io.PET.prd.BinaryPrdExperimentWriter method) (pytomography.io.PET.prd.ndjson.NDJsonPrdExperimentWriter method) (pytomography.io.PET.prd.NDJsonPrdExperimentWriter method) (pytomography.io.PET.prd.PrdExperimentWriterBase method) (pytomography.io.PET.prd.protocols.PrdExperimentWriterBase method) _write_json_line() (pytomography.io.PET.prd._ndjson.NDJsonProtocolWriter method) _write_time_blocks() (pytomography.io.PET.prd.binary.BinaryPrdExperimentWriter method) (pytomography.io.PET.prd.BinaryPrdExperimentWriter method) (pytomography.io.PET.prd.ndjson.NDJsonPrdExperimentWriter method) (pytomography.io.PET.prd.NDJsonPrdExperimentWriter method) (pytomography.io.PET.prd.PrdExperimentWriterBase method) (pytomography.io.PET.prd.protocols.PrdExperimentWriterBase method)

A

add_patient_information() (in module pytomography.io.shared.dicom_creation) add_required_elements_to_ds() (in module pytomography.io.shared.dicom_creation) add_study_and_series_information() (in module pytomography.io.shared.dicom_creation) address (pytomography.io.PET.prd.Institution attribute) (pytomography.io.PET.prd.types.Institution attribute)

align_images_affine() (in module pytomography.io.shared) (in module pytomography.io.shared.dicom) AnatomyNeighbourWeight (class in pytomography.priors) (class in pytomography.priors.nearest_neighbour) ArbitraryPSFNet (class in pytomography.transforms.SPECT.psf)

B

backward() (pytomography.projectors.ExtendedSystemMatrix method) (pytomography.projectors.PET.pet_sinogram_system_matrix.PETSinogramSystemMatrix method) (pytomography.projectors.PET.petlm_system_matrix.PETLMSystemMatrix method) (pytomography.projectors.PET.PETLMSystemMatrix method) (pytomography.projectors.PET.PETSinogramSystemMatrix method) (pytomography.projectors.shared.kem_system_matrix.KEMSystemMatrix method) (pytomography.projectors.shared.KEMSystemMatrix method) (pytomography.projectors.SPECT.spect_system_matrix.SPECTCompleteSystemMatrix method) (pytomography.projectors.SPECT.spect_system_matrix.SPECTSystemMatrix method) (pytomography.projectors.SPECT.SPECTCompleteSystemMatrix method) (pytomography.projectors.SPECT.SPECTSystemMatrix method) (pytomography.projectors.system_matrix.ExtendedSystemMatrix method) (pytomography.projectors.system_matrix.SystemMatrix method) (pytomography.projectors.SystemMatrix method) (pytomography.transforms.shared.DVFMotionTransform method) (pytomography.transforms.shared.filters.GaussianFilter method) (pytomography.transforms.shared.GaussianFilter method) (pytomography.transforms.shared.kem.KEMTransform method) (pytomography.transforms.shared.KEMTransform method) (pytomography.transforms.shared.motion.DVFMotionTransform method) (pytomography.transforms.shared.RotationTransform method) (pytomography.transforms.shared.spatial.RotationTransform method) (pytomography.transforms.SPECT.attenuation.SPECTAttenuationTransform method) (pytomography.transforms.SPECT.psf.SPECTPSFTransform method) (pytomography.transforms.SPECT.SPECTAttenuationTransform method) (pytomography.transforms.SPECT.SPECTPSFTransform method) (pytomography.transforms.Transform method) (pytomography.transforms.transform.Transform method)

bilinear_transform() (in module pytomography.io.CT.attenuation_map) BinaryPrdExperimentReader (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.binary) BinaryPrdExperimentWriter (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.binary) BinaryProtocolReader (class in pytomography.io.PET.prd._binary) BinaryProtocolWriter (class in pytomography.io.PET.prd._binary) bool_converter (in module pytomography.io.PET.prd._ndjson) bool_serializer (in module pytomography.io.PET.prd._binary) BoolConverter (class in pytomography.io.PET.prd._ndjson) BoolSerializer (class in pytomography.io.PET.prd._binary) BSREM (class in pytomography.algorithms) (class in pytomography.algorithms.preconditioned_gradient_ascent) built-in function _listmodeTOF_to_sinogramTOF() get_axial_trans_ids_from_info() get_detector_ids_from_trans_axial_ids() get_scanner_LUT() listmode_to_sinogram() randoms_sinogram_to_sinogramTOF() sinogram_coordinates() sinogram_to_listmode() sinogram_to_spatial() smooth_randoms_sinogram()

C

Callback (class in pytomography.callbacks) (class in pytomography.callbacks.callback) check_dtype() (pytomography.io.PET.prd._ndjson.NDArrayConverterBase method) check_if_class_contains_method() (in module pytomography.utils) (in module pytomography.utils.misc) close() (pytomography.io.PET.prd._binary.BinaryProtocolReader method) (pytomography.io.PET.prd._binary.BinaryProtocolWriter method) (pytomography.io.PET.prd._binary.CodedInputStream method) (pytomography.io.PET.prd._binary.CodedOutputStream method) (pytomography.io.PET.prd._ndjson.NDJsonProtocolReader method) (pytomography.io.PET.prd._ndjson.NDJsonProtocolWriter method) (pytomography.io.PET.prd.PrdExperimentReaderBase method) (pytomography.io.PET.prd.PrdExperimentWriterBase method) (pytomography.io.PET.prd.protocols.PrdExperimentReaderBase method) (pytomography.io.PET.prd.protocols.PrdExperimentWriterBase method) CodedInputStream (class in pytomography.io.PET.prd._binary) CodedOutputStream (class in pytomography.io.PET.prd._binary) CoincidenceEvent (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.types) combine_projection_data() (in module pytomography.io.SPECT.simind) Complex32Converter (class in pytomography.io.PET.prd._ndjson) Complex32Serializer (class in pytomography.io.PET.prd._binary) Complex64Converter (class in pytomography.io.PET.prd._ndjson) Complex64Serializer (class in pytomography.io.PET.prd._binary) ComplexDouble (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) ComplexFloat (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) complexfloat32_converter (in module pytomography.io.PET.prd._ndjson) complexfloat32_serializer (in module pytomography.io.PET.prd._binary) complexfloat64_converter (in module pytomography.io.PET.prd._ndjson) complexfloat64_serializer (in module pytomography.io.PET.prd._binary) compute_average_prob_matrix() (pytomography.transforms.SPECT.attenuation.SPECTAttenuationTransform method) (pytomography.transforms.SPECT.SPECTAttenuationTransform method) compute_EW_scatter() (in module pytomography.utils) (in module pytomography.utils.scatter) compute_gradient() (pytomography.likelihoods.Likelihood method) (pytomography.likelihoods.likelihood.Likelihood method) (pytomography.likelihoods.mse_objective.NegativeMSELikelihood method) (pytomography.likelihoods.mse_objective.SARTWeightedNegativeMSELikelihood method) (pytomography.likelihoods.NegativeMSELikelihood method) (pytomography.likelihoods.poisson_log_likelihood.PoissonLogLikelihood method) (pytomography.likelihoods.PoissonLogLikelihood method) (pytomography.likelihoods.SARTWeightedNegativeMSELikelihood method) compute_gradient_ff() (pytomography.likelihoods.Likelihood method) (pytomography.likelihoods.likelihood.Likelihood method) (pytomography.likelihoods.poisson_log_likelihood.PoissonLogLikelihood method) (pytomography.likelihoods.PoissonLogLikelihood method) compute_gradient_gf() (pytomography.likelihoods.Likelihood method) (pytomography.likelihoods.likelihood.Likelihood method) (pytomography.likelihoods.poisson_log_likelihood.PoissonLogLikelihood method) (pytomography.likelihoods.PoissonLogLikelihood method)

compute_gradient_sf() (pytomography.likelihoods.Likelihood method) (pytomography.likelihoods.likelihood.Likelihood method) (pytomography.likelihoods.poisson_log_likelihood.PoissonLogLikelihood method) (pytomography.likelihoods.PoissonLogLikelihood method) compute_inclusion_tensor() (pytomography.priors.nearest_neighbour.TopNAnatomyNeighbourWeight method) (pytomography.priors.TopNAnatomyNeighbourWeight method) compute_kernel() (pytomography.transforms.shared.kem.KEMTransform method) (pytomography.transforms.shared.KEMTransform method) compute_max_slice_loc_multifile() (in module pytomography.io.shared.dicom) compute_normalization_factor() (pytomography.projectors.ExtendedSystemMatrix method) (pytomography.projectors.PET.pet_sinogram_system_matrix.PETSinogramSystemMatrix method) (pytomography.projectors.PET.petlm_system_matrix.PETLMSystemMatrix method) (pytomography.projectors.PET.PETLMSystemMatrix method) (pytomography.projectors.PET.PETSinogramSystemMatrix method) (pytomography.projectors.shared.kem_system_matrix.KEMSystemMatrix method) (pytomography.projectors.shared.KEMSystemMatrix method) (pytomography.projectors.SPECT.spect_system_matrix.SPECTSystemMatrix method) (pytomography.projectors.SPECT.SPECTSystemMatrix method) (pytomography.projectors.system_matrix.ExtendedSystemMatrix method) compute_pad_size() (in module pytomography.utils) (in module pytomography.utils.spatial) compute_pad_size_padded() (in module pytomography.utils.spatial) compute_padded_shape() (pytomography.metadata.SPECT.spect_metadata.SPECTObjectMeta method) (pytomography.metadata.SPECT.spect_metadata.SPECTProjMeta method) (pytomography.metadata.SPECT.SPECTObjectMeta method) (pytomography.metadata.SPECT.SPECTProjMeta method) compute_slice_thickness_multifile() (in module pytomography.io.shared.dicom) compute_sss_sparse_sinogram() (in module pytomography.utils.sss) compute_sss_sparse_sinogram_TOF() (in module pytomography.utils.sss) compute_uncertainty() (pytomography.algorithms.PGAAMultiBedSPECT method) (pytomography.algorithms.preconditioned_gradient_ascent.LinearPreconditionedGradientAscentAlgorithm method) (pytomography.algorithms.preconditioned_gradient_ascent.PGAAMultiBedSPECT method) configure() (pytomography.transforms.shared.filters.GaussianFilter method) (pytomography.transforms.shared.GaussianFilter method) (pytomography.transforms.shared.kem.KEMTransform method) (pytomography.transforms.shared.KEMTransform method) (pytomography.transforms.SPECT.attenuation.SPECTAttenuationTransform method) (pytomography.transforms.SPECT.psf.SPECTPSFTransform method) (pytomography.transforms.SPECT.SPECTAttenuationTransform method) (pytomography.transforms.SPECT.SPECTPSFTransform method) (pytomography.transforms.Transform method) (pytomography.transforms.transform.Transform method) copy_to() (pytomography.io.PET.prd.PrdExperimentReaderBase method) (pytomography.io.PET.prd.protocols.PrdExperimentReaderBase method) create_ds() (in module pytomography.io.shared) (in module pytomography.io.shared.dicom_creation) create_sinogramSM_from_LMSM() (in module pytomography.projectors.PET) (in module pytomography.projectors.PET.pet_sinogram_system_matrix) CT_to_mumap() (in module pytomography.io.SPECT) (in module pytomography.io.SPECT.dicom) CURRENT_BINARY_FORMAT_VERSION (in module pytomography.io.PET.prd._binary) CURRENT_NDJSON_FORMAT_VERSION (in module pytomography.io.PET.prd._ndjson)

D

DATADIR (in module pytomography.io.CT.attenuation_map) DataStorageCallback (class in pytomography.callbacks) (class in pytomography.callbacks.data_saving) date_converter (in module pytomography.io.PET.prd._ndjson) date_serializer (in module pytomography.io.PET.prd._binary) DateConverter (class in pytomography.io.PET.prd._ndjson) DateSerializer (class in pytomography.io.PET.prd._binary) DateTime (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.yardl_types) datetime_converter (in module pytomography.io.PET.prd._ndjson) DATETIME_DAYS_DTYPE (in module pytomography.io.PET.prd._binary) DATETIME_NANOSECONDS_DTYPE (in module pytomography.io.PET.prd._binary) datetime_serializer (in module pytomography.io.PET.prd._binary) DateTimeConverter (class in pytomography.io.PET.prd._ndjson) DateTimeSerializer (class in pytomography.io.PET.prd._binary) delayed_events (pytomography.io.PET.prd.TimeBlock attribute) (pytomography.io.PET.prd.types.TimeBlock attribute) delta (in module pytomography) Detector (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.types)

detector_1_id (pytomography.io.PET.prd.CoincidenceEvent attribute) (pytomography.io.PET.prd.types.CoincidenceEvent attribute) detector_2_id (pytomography.io.PET.prd.CoincidenceEvent attribute) (pytomography.io.PET.prd.types.CoincidenceEvent attribute) detector_efficiency() (in module pytomography.utils.sss) detectors (pytomography.io.PET.prd.ScannerInformation attribute) (pytomography.io.PET.prd.types.ScannerInformation attribute) device (in module pytomography) diff_compton_cross_section() (in module pytomography.utils.sss) DIPRecon (class in pytomography.algorithms) (class in pytomography.algorithms.dip_recon) dtype (in module pytomography) dual_sqrt_exponential() (in module pytomography.utils) (in module pytomography.utils.nist_data) DVFMotionTransform (class in pytomography.transforms.shared) (class in pytomography.transforms.shared.motion) DynamicNDArrayConverter (class in pytomography.io.PET.prd._ndjson) DynamicNDArraySerializer (class in pytomography.io.PET.prd._binary)

E

energy_1_idx (pytomography.io.PET.prd.CoincidenceEvent attribute) (pytomography.io.PET.prd.types.CoincidenceEvent attribute) energy_2_idx (pytomography.io.PET.prd.CoincidenceEvent attribute) (pytomography.io.PET.prd.types.CoincidenceEvent attribute) energy_bin_edges (pytomography.io.PET.prd.ScannerInformation attribute) (pytomography.io.PET.prd.types.ScannerInformation attribute) energy_resolution_at_511 (pytomography.io.PET.prd.ScannerInformation attribute) (pytomography.io.PET.prd.types.ScannerInformation attribute) ensure_capacity() (pytomography.io.PET.prd._binary.CodedOutputStream method) EnumConverter (class in pytomography.io.PET.prd._ndjson)

EnumSerializer (class in pytomography.io.PET.prd._binary) EPOCH_DATETIME (in module pytomography.io.PET.prd._binary) EPOCH_ORDINAL_DAYS (in module pytomography.io.PET.prd._binary) EuclideanNeighbourWeight (class in pytomography.priors) (class in pytomography.priors.nearest_neighbour) exam (pytomography.io.PET.prd.Header attribute) (pytomography.io.PET.prd.types.Header attribute) ExamInformation (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.types) ExtendedSystemMatrix (class in pytomography.projectors) (class in pytomography.projectors.system_matrix)

F

FILE_AIR (in module pytomography.io.CT.attenuation_map) FILE_CBONE (in module pytomography.io.CT.attenuation_map) FILE_WATER (in module pytomography.io.CT.attenuation_map) FilteredBackProjection (class in pytomography.algorithms) (class in pytomography.algorithms.fbp) finalize() (pytomography.callbacks.Callback method) (pytomography.callbacks.callback.Callback method) (pytomography.callbacks.data_saving.DataStorageCallback method) (pytomography.callbacks.DataStorageCallback method) FixedNDArrayConverter (class in pytomography.io.PET.prd._ndjson) FixedNDArraySerializer (class in pytomography.io.PET.prd._binary) FixedVectorConverter (class in pytomography.io.PET.prd._ndjson) FixedVectorSerializer (class in pytomography.io.PET.prd._binary) FlagsConverter (class in pytomography.io.PET.prd._ndjson) Float32 (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) float32_converter (in module pytomography.io.PET.prd._ndjson) float32_serializer (in module pytomography.io.PET.prd._binary) Float32Converter (class in pytomography.io.PET.prd._ndjson) Float32Serializer (class in pytomography.io.PET.prd._binary) Float64 (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) float64_converter (in module pytomography.io.PET.prd._ndjson) float64_serializer (in module pytomography.io.PET.prd._binary) Float64Converter (class in pytomography.io.PET.prd._ndjson) Float64Serializer (class in pytomography.io.PET.prd._binary) flush() (pytomography.io.PET.prd._binary.CodedOutputStream method) forward() (pytomography.projectors.ExtendedSystemMatrix method) (pytomography.projectors.PET.pet_sinogram_system_matrix.PETSinogramSystemMatrix method) (pytomography.projectors.PET.petlm_system_matrix.PETLMSystemMatrix method) (pytomography.projectors.PET.PETLMSystemMatrix method) (pytomography.projectors.PET.PETSinogramSystemMatrix method) (pytomography.projectors.shared.kem_system_matrix.KEMSystemMatrix method) (pytomography.projectors.shared.KEMSystemMatrix method) (pytomography.projectors.SPECT.spect_system_matrix.SPECTCompleteSystemMatrix method) (pytomography.projectors.SPECT.spect_system_matrix.SPECTSystemMatrix method) (pytomography.projectors.SPECT.SPECTCompleteSystemMatrix method) (pytomography.projectors.SPECT.SPECTSystemMatrix method) (pytomography.projectors.system_matrix.ExtendedSystemMatrix method) (pytomography.projectors.system_matrix.SystemMatrix method) (pytomography.projectors.SystemMatrix method) (pytomography.transforms.shared.DVFMotionTransform method) (pytomography.transforms.shared.filters.GaussianFilter method) (pytomography.transforms.shared.GaussianFilter method) (pytomography.transforms.shared.kem.KEMTransform method) (pytomography.transforms.shared.KEMTransform method) (pytomography.transforms.shared.motion.DVFMotionTransform method) (pytomography.transforms.shared.RotationTransform method) (pytomography.transforms.shared.spatial.RotationTransform method) (pytomography.transforms.SPECT.attenuation.SPECTAttenuationTransform method) (pytomography.transforms.SPECT.psf.ArbitraryPSFNet method) (pytomography.transforms.SPECT.psf.GaussianBlurNet method) (pytomography.transforms.SPECT.psf.SPECTPSFTransform method) (pytomography.transforms.SPECT.SPECTAttenuationTransform method) (pytomography.transforms.SPECT.SPECTPSFTransform method) (pytomography.transforms.Transform method) (pytomography.transforms.transform.Transform method) from_components() (pytomography.io.PET.prd.DateTime static method) (pytomography.io.PET.prd.Time static method) (pytomography.io.PET.prd.yardl_types.DateTime static method) (pytomography.io.PET.prd.yardl_types.Time static method) from_datetime() (pytomography.io.PET.prd.DateTime static method) (pytomography.io.PET.prd.yardl_types.DateTime static method) from_json() (pytomography.io.PET.prd._ndjson.BoolConverter method) (pytomography.io.PET.prd._ndjson.Complex32Converter method) (pytomography.io.PET.prd._ndjson.Complex64Converter method) (pytomography.io.PET.prd._ndjson.DateConverter method) (pytomography.io.PET.prd._ndjson.DateTimeConverter method) (pytomography.io.PET.prd._ndjson.DynamicNDArrayConverter method) (pytomography.io.PET.prd._ndjson.EnumConverter method) (pytomography.io.PET.prd._ndjson.FixedNDArrayConverter method) (pytomography.io.PET.prd._ndjson.FixedVectorConverter method) (pytomography.io.PET.prd._ndjson.FlagsConverter method) (pytomography.io.PET.prd._ndjson.Float32Converter method) (pytomography.io.PET.prd._ndjson.Float64Converter method) (pytomography.io.PET.prd._ndjson.Int16Converter method) (pytomography.io.PET.prd._ndjson.Int32Converter method) (pytomography.io.PET.prd._ndjson.Int64Converter method) (pytomography.io.PET.prd._ndjson.Int8Converter method) (pytomography.io.PET.prd._ndjson.JsonConverter method) (pytomography.io.PET.prd._ndjson.MapConverter method) (pytomography.io.PET.prd._ndjson.NDArrayConverter method) (pytomography.io.PET.prd._ndjson.OptionalConverter method) (pytomography.io.PET.prd._ndjson.SizeConverter method) (pytomography.io.PET.prd._ndjson.StringConverter method) (pytomography.io.PET.prd._ndjson.TimeConverter method) (pytomography.io.PET.prd._ndjson.UInt16Converter method) (pytomography.io.PET.prd._ndjson.UInt32Converter method) (pytomography.io.PET.prd._ndjson.UInt64Converter method) (pytomography.io.PET.prd._ndjson.UInt8Converter method) (pytomography.io.PET.prd._ndjson.UnionConverter method) (pytomography.io.PET.prd._ndjson.VectorConverter method) (pytomography.io.PET.prd.ndjson._CoincidenceEventConverter method) (pytomography.io.PET.prd.ndjson._DetectorConverter method) (pytomography.io.PET.prd.ndjson._ExamInformationConverter method) (pytomography.io.PET.prd.ndjson._HeaderConverter method) (pytomography.io.PET.prd.ndjson._InstitutionConverter method) (pytomography.io.PET.prd.ndjson._ScannerInformationConverter method) (pytomography.io.PET.prd.ndjson._SubjectConverter method) (pytomography.io.PET.prd.ndjson._TimeBlockConverter method) (pytomography.io.PET.prd.ndjson._TimeFrameInformationConverter method) (pytomography.io.PET.prd.ndjson._TimeIntervalConverter method)

from_json_to_numpy() (pytomography.io.PET.prd._ndjson.BoolConverter method) (pytomography.io.PET.prd._ndjson.Complex32Converter method) (pytomography.io.PET.prd._ndjson.Complex64Converter method) (pytomography.io.PET.prd._ndjson.DateConverter method) (pytomography.io.PET.prd._ndjson.DateTimeConverter method) (pytomography.io.PET.prd._ndjson.DynamicNDArrayConverter method) (pytomography.io.PET.prd._ndjson.EnumConverter method) (pytomography.io.PET.prd._ndjson.FixedNDArrayConverter method) (pytomography.io.PET.prd._ndjson.FixedVectorConverter method) (pytomography.io.PET.prd._ndjson.FlagsConverter method) (pytomography.io.PET.prd._ndjson.Float32Converter method) (pytomography.io.PET.prd._ndjson.Float64Converter method) (pytomography.io.PET.prd._ndjson.Int16Converter method) (pytomography.io.PET.prd._ndjson.Int32Converter method) (pytomography.io.PET.prd._ndjson.Int64Converter method) (pytomography.io.PET.prd._ndjson.Int8Converter method) (pytomography.io.PET.prd._ndjson.JsonConverter method) (pytomography.io.PET.prd._ndjson.MapConverter method) (pytomography.io.PET.prd._ndjson.NDArrayConverter method) (pytomography.io.PET.prd._ndjson.OptionalConverter method) (pytomography.io.PET.prd._ndjson.SizeConverter method) (pytomography.io.PET.prd._ndjson.StringConverter method) (pytomography.io.PET.prd._ndjson.TimeConverter method) (pytomography.io.PET.prd._ndjson.UInt16Converter method) (pytomography.io.PET.prd._ndjson.UInt32Converter method) (pytomography.io.PET.prd._ndjson.UInt64Converter method) (pytomography.io.PET.prd._ndjson.UInt8Converter method) (pytomography.io.PET.prd._ndjson.UnionConverter method) (pytomography.io.PET.prd._ndjson.VectorConverter method) (pytomography.io.PET.prd.ndjson._CoincidenceEventConverter method) (pytomography.io.PET.prd.ndjson._DetectorConverter method) (pytomography.io.PET.prd.ndjson._ExamInformationConverter method) (pytomography.io.PET.prd.ndjson._HeaderConverter method) (pytomography.io.PET.prd.ndjson._InstitutionConverter method) (pytomography.io.PET.prd.ndjson._ScannerInformationConverter method) (pytomography.io.PET.prd.ndjson._SubjectConverter method) (pytomography.io.PET.prd.ndjson._TimeBlockConverter method) (pytomography.io.PET.prd.ndjson._TimeFrameInformationConverter method) (pytomography.io.PET.prd.ndjson._TimeIntervalConverter method) from_time() (pytomography.io.PET.prd.Time static method) (pytomography.io.PET.prd.yardl_types.Time static method)

G

GaussianBlurNet (class in pytomography.transforms.SPECT.psf) GaussianFilter (class in pytomography.transforms.shared) (class in pytomography.transforms.shared.filters) generate_base_dataset() (in module pytomography.io.shared.dicom_creation) get_1d_gaussian_kernel() (in module pytomography.utils) (in module pytomography.utils.misc) get_1D_PSF_layer() (in module pytomography.transforms.SPECT.psf) get_additive_term_hdf5() (in module pytomography.io.PET.clinical) get_aligned_attenuation_map() (in module pytomography.io.PET.gate) get_aligned_nifti_mask() (in module pytomography.io.SPECT.dicom) get_aligned_rtstruct() (in module pytomography.io.SPECT.dicom) get_angle() (in module pytomography.io.PET.gate) get_attenuation_map() (in module pytomography.io.SPECT) (in module pytomography.io.SPECT.simind) get_attenuation_map_from_CT_slices() (in module pytomography.io.SPECT) (in module pytomography.io.SPECT.dicom) get_attenuation_map_from_file() (in module pytomography.io.SPECT) (in module pytomography.io.SPECT.dicom) get_attenuation_map_interfile() (in module pytomography.io.shared) (in module pytomography.io.shared.interfile) get_attenuation_map_nifti() (in module pytomography.io.PET.gate) get_axial_trans_ids_from_info() built-in function get_axial_trans_ids_from_info() (in module pytomography.io.PET.shared) get_axial_trans_ids_from_ROOT() (in module pytomography.io.PET.gate) get_detector_ids() (in module pytomography.io.PET.petsird) get_detector_ids_from_root() (in module pytomography.io.PET.gate) get_detector_ids_from_trans_axial_ids() built-in function get_detector_ids_from_trans_axial_ids() (in module pytomography.io.PET.shared) get_detector_ids_hdf5() (in module pytomography.io.PET.clinical) get_detector_info() (in module pytomography.io.PET.clinical) (in module pytomography.io.PET.gate) get_distance() (in module pytomography.utils) (in module pytomography.utils.misc) get_dtype (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.types) get_E_mu_data_from_datasheet() (in module pytomography.utils) (in module pytomography.utils.nist_data) get_ECT_from_corticalbone_HU() (in module pytomography.io.CT.attenuation_map) get_energy_window_scatter_estimate() (in module pytomography.io.SPECT) (in module pytomography.io.SPECT.dicom) get_energy_window_scatter_estimate_projections() (in module pytomography.io.SPECT.dicom) get_energy_window_width() (in module pytomography.io.SPECT.simind) get_file_meta() (in module pytomography.io.shared.dicom_creation) get_header_value() (in module pytomography.io.shared) (in module pytomography.io.shared.interfile) get_HU2mu_conversion() (in module pytomography.io.CT) (in module pytomography.io.CT.attenuation_map) get_HU_corticalbone() (in module pytomography.io.CT.attenuation_map)

get_HU_from_spectrum_interp() (in module pytomography.io.CT.attenuation_map) get_HU_mu_curve() (in module pytomography.io.CT.attenuation_map) get_metadata() (in module pytomography.io.SPECT.dicom) (in module pytomography.io.SPECT.simind) get_mu_from_spectrum_interp() (in module pytomography.utils) (in module pytomography.utils.nist_data) get_norm_sinogram_from_listmode_data() (in module pytomography.io.PET.gate) get_norm_sinogram_from_root_data() (in module pytomography.io.PET.gate) get_normalization_weights_cylinder_calibration() (in module pytomography.io.PET.gate) get_object_nearest_neighbour() (in module pytomography.utils) (in module pytomography.utils.misc) get_prob_of_detection_matrix() (in module pytomography.transforms.SPECT.attenuation) get_projection_subset() (pytomography.projectors.ExtendedSystemMatrix method) (pytomography.projectors.PET.pet_sinogram_system_matrix.PETSinogramSystemMatrix method) (pytomography.projectors.PET.petlm_system_matrix.PETLMSystemMatrix method) (pytomography.projectors.PET.PETLMSystemMatrix method) (pytomography.projectors.PET.PETSinogramSystemMatrix method) (pytomography.projectors.SPECT.spect_system_matrix.SPECTSystemMatrix method) (pytomography.projectors.SPECT.SPECTSystemMatrix method) (pytomography.projectors.system_matrix.ExtendedSystemMatrix method) get_projections() (in module pytomography.io.SPECT) (in module pytomography.io.SPECT.dicom) (in module pytomography.io.SPECT.simind) get_psfmeta_from_header() (in module pytomography.io.SPECT.simind) get_psfmeta_from_scanner_params() (in module pytomography.io.SPECT) (in module pytomography.io.SPECT.dicom) get_radius() (in module pytomography.io.PET.gate) get_sample_detector_ids() (in module pytomography.utils.sss) get_sample_scatter_points() (in module pytomography.utils.sss) get_scanner_LUT() built-in function get_scanner_LUT() (in module pytomography.io.PET.shared) get_scanner_LUT_from_header() (in module pytomography.io.PET.petsird) get_sensitivity_ids_and_weights_hdf5() (in module pytomography.io.PET.clinical) get_sensitivity_ids_hdf5() (in module pytomography.io.PET.clinical) get_sinogram_from_root_data() (in module pytomography.io.PET.gate) get_sss_scatter_estimate() (in module pytomography.utils.sss) get_subset_splits() (pytomography.projectors.system_matrix.SystemMatrix method) (pytomography.projectors.SystemMatrix method) get_symmetry_histogram_all_combos() (in module pytomography.io.PET.gate) get_symmetry_histogram_from_ROOTfile() (in module pytomography.io.PET.gate) get_tof_meta() (in module pytomography.io.PET.clinical) get_TOF_meta_from_header() (in module pytomography.io.PET.petsird) get_weighting_subset() (pytomography.projectors.PET.pet_sinogram_system_matrix.PETSinogramSystemMatrix method) (pytomography.projectors.PET.petlm_system_matrix.PETLMSystemMatrix method) (pytomography.projectors.PET.PETLMSystemMatrix method) (pytomography.projectors.PET.PETSinogramSystemMatrix method) (pytomography.projectors.SPECT.spect_system_matrix.SPECTSystemMatrix method) (pytomography.projectors.SPECT.SPECTSystemMatrix method) get_weights_hdf5() (in module pytomography.io.PET.clinical) get_window_width() (in module pytomography.io.SPECT.dicom)

H

HammingFilter (class in pytomography.utils) (class in pytomography.utils.fourier_filters)

Header (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.types) HU_to_mu() (in module pytomography.io.CT.attenuation_map)

I

id (pytomography.io.PET.prd.Detector attribute) (pytomography.io.PET.prd.Subject attribute) (pytomography.io.PET.prd.TimeBlock attribute) (pytomography.io.PET.prd.types.Detector attribute) (pytomography.io.PET.prd.types.Subject attribute) (pytomography.io.PET.prd.types.TimeBlock attribute) index (pytomography.io.PET.prd._binary.UnionCaseProtocol attribute) (pytomography.io.PET.prd.UnionCase attribute) (pytomography.io.PET.prd.yardl_types.UnionCase attribute) initialize_transforms() (pytomography.projectors.system_matrix.SystemMatrix method) (pytomography.projectors.SystemMatrix method) Institution (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.types) institution (pytomography.io.PET.prd.ExamInformation attribute) (pytomography.io.PET.prd.types.ExamInformation attribute) Int16 (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) int16_converter (in module pytomography.io.PET.prd._ndjson) INT16_MAX (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) INT16_MIN (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) int16_serializer (in module pytomography.io.PET.prd._binary) Int16Converter (class in pytomography.io.PET.prd._ndjson) Int16Serializer (class in pytomography.io.PET.prd._binary) Int32 (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) int32_converter (in module pytomography.io.PET.prd._ndjson) INT32_MAX (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) INT32_MIN (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) int32_serializer (in module pytomography.io.PET.prd._binary) int32_struct (in module pytomography.io.PET.prd._binary)

Int32Converter (class in pytomography.io.PET.prd._ndjson) Int32Serializer (class in pytomography.io.PET.prd._binary) Int64 (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) int64_converter (in module pytomography.io.PET.prd._ndjson) INT64_MAX (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) INT64_MIN (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) int64_serializer (in module pytomography.io.PET.prd._binary) Int64Converter (class in pytomography.io.PET.prd._ndjson) Int64Serializer (class in pytomography.io.PET.prd._binary) Int8 (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) int8_converter (in module pytomography.io.PET.prd._ndjson) INT8_MAX (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) INT8_MIN (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) int8_serializer (in module pytomography.io.PET.prd._binary) Int8Converter (class in pytomography.io.PET.prd._ndjson) Int8Serializer (class in pytomography.io.PET.prd._binary) interpolate_sparse_sinogram() (in module pytomography.utils.sss) is_trivially_serializable() (pytomography.io.PET.prd._binary.Complex32Serializer method) (pytomography.io.PET.prd._binary.Complex64Serializer method) (pytomography.io.PET.prd._binary.EnumSerializer method) (pytomography.io.PET.prd._binary.FixedNDArraySerializer method) (pytomography.io.PET.prd._binary.FixedVectorSerializer method) (pytomography.io.PET.prd._binary.Float32Serializer method) (pytomography.io.PET.prd._binary.Float64Serializer method) (pytomography.io.PET.prd._binary.Int8Serializer method) (pytomography.io.PET.prd._binary.OptionalSerializer method) (pytomography.io.PET.prd._binary.RecordSerializer method) (pytomography.io.PET.prd._binary.TypeSerializer method) (pytomography.io.PET.prd._binary.UInt8Serializer method)

J

JsonConverter (class in pytomography.io.PET.prd._ndjson)

K

KEM (class in pytomography.algorithms) (class in pytomography.algorithms.preconditioned_gradient_ascent) KEMSystemMatrix (class in pytomography.projectors.shared) (class in pytomography.projectors.shared.kem_system_matrix)

KEMTransform (class in pytomography.transforms.shared) (class in pytomography.transforms.shared.kem)

L

Likelihood (class in pytomography.likelihoods) (class in pytomography.likelihoods.likelihood) LinearPreconditionedGradientAscentAlgorithm (class in pytomography.algorithms.preconditioned_gradient_ascent) listmode_time_block_duration (pytomography.io.PET.prd.ScannerInformation attribute) (pytomography.io.PET.prd.types.ScannerInformation attribute)

listmode_to_sinogram() built-in function listmode_to_sinogram() (in module pytomography.io.PET.shared) load_multibed_projections() (in module pytomography.io.SPECT.dicom), [1] LogCoshPrior (class in pytomography.priors) (class in pytomography.priors.nearest_neighbour)

M

MAGIC_BYTES (in module pytomography.io.PET.prd._binary) make_get_dtype_func() (in module pytomography.io.PET.prd._dtypes) MapConverter (class in pytomography.io.PET.prd._ndjson) MapSerializer (class in pytomography.io.PET.prd._binary) MISSING_SENTINEL (in module pytomography.io.PET.prd._ndjson) MLEM (class in pytomography.algorithms) (class in pytomography.algorithms.preconditioned_gradient_ascent) model_name (pytomography.io.PET.prd.ScannerInformation attribute) (pytomography.io.PET.prd.types.ScannerInformation attribute) modify_tof_events() (in module pytomography.io.PET.clinical) module pytomography pytomography.algorithms pytomography.algorithms.dip_recon pytomography.algorithms.fbp pytomography.algorithms.preconditioned_gradient_ascent pytomography.callbacks pytomography.callbacks.callback pytomography.callbacks.data_saving pytomography.io pytomography.io.CT pytomography.io.CT.attenuation_map pytomography.io.PET pytomography.io.PET.clinical pytomography.io.PET.gate pytomography.io.PET.petsird pytomography.io.PET.prd pytomography.io.PET.prd._binary pytomography.io.PET.prd._dtypes pytomography.io.PET.prd._ndjson pytomography.io.PET.prd.binary pytomography.io.PET.prd.ndjson pytomography.io.PET.prd.protocols pytomography.io.PET.prd.types pytomography.io.PET.prd.yardl_types pytomography.io.PET.shared pytomography.io.shared pytomography.io.shared.dicom pytomography.io.shared.dicom_creation pytomography.io.shared.interfile pytomography.io.SPECT pytomography.io.SPECT.dicom pytomography.io.SPECT.shared pytomography.io.SPECT.simind pytomography.likelihoods pytomography.likelihoods.likelihood pytomography.likelihoods.mse_objective pytomography.likelihoods.poisson_log_likelihood pytomography.metadata pytomography.metadata.metadata pytomography.metadata.PET pytomography.metadata.PET.pet_sinogram_metadata pytomography.metadata.PET.pet_tof_metadata pytomography.metadata.PET.petlm_metadata pytomography.metadata.SPECT pytomography.metadata.SPECT.spect_metadata pytomography.priors pytomography.priors.nearest_neighbour pytomography.priors.prior pytomography.projectors pytomography.projectors.PET pytomography.projectors.PET.pet_sinogram_system_matrix pytomography.projectors.PET.petlm_system_matrix pytomography.projectors.shared pytomography.projectors.shared.kem_system_matrix pytomography.projectors.shared.motion_correction_system_matrix pytomography.projectors.SPECT pytomography.projectors.SPECT.spect_system_matrix pytomography.projectors.system_matrix pytomography.transforms pytomography.transforms.shared pytomography.transforms.shared.filters pytomography.transforms.shared.kem pytomography.transforms.shared.motion pytomography.transforms.shared.spatial pytomography.transforms.SPECT pytomography.transforms.SPECT.attenuation pytomography.transforms.SPECT.psf pytomography.transforms.transform pytomography.utils pytomography.utils.fourier_filters pytomography.utils.misc pytomography.utils.nist_data pytomography.utils.scatter pytomography.utils.spatial pytomography.utils.sss

module_path (in module pytomography.io.CT.attenuation_map) MotionSystemMatrix (class in pytomography.projectors.shared) (class in pytomography.projectors.shared.motion_correction_system_matrix)

N

name (pytomography.io.PET.prd.Institution attribute) (pytomography.io.PET.prd.Subject attribute) (pytomography.io.PET.prd.types.Institution attribute) (pytomography.io.PET.prd.types.Subject attribute) NDArrayConverter (class in pytomography.io.PET.prd._ndjson) NDArrayConverterBase (class in pytomography.io.PET.prd._ndjson) NDArraySerializer (class in pytomography.io.PET.prd._binary) NDArraySerializerBase (class in pytomography.io.PET.prd._binary) NDJsonPrdExperimentReader (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.ndjson) NDJsonPrdExperimentWriter (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.ndjson) NDJsonProtocolReader (class in pytomography.io.PET.prd._ndjson) NDJsonProtocolWriter (class in pytomography.io.PET.prd._ndjson) NearestNeighbourPrior (class in pytomography.priors) (class in pytomography.priors.nearest_neighbour) NegativeMSELikelihood (class in pytomography.likelihoods) (class in pytomography.likelihoods.mse_objective) NeighbourWeight (class in pytomography.priors) (class in pytomography.priors.nearest_neighbour) none_serializer (in module pytomography.io.PET.prd._binary) NoneSerializer (class in pytomography.io.PET.prd._binary) now() (pytomography.io.PET.prd.DateTime static method) (pytomography.io.PET.prd.yardl_types.DateTime static method) number_of_detectors() (pytomography.io.PET.prd.ScannerInformation method) (pytomography.io.PET.prd.types.ScannerInformation method) number_of_energy_bins() (pytomography.io.PET.prd.ScannerInformation method) (pytomography.io.PET.prd.types.ScannerInformation method) number_of_time_frames() (pytomography.io.PET.prd.TimeFrameInformation method) (pytomography.io.PET.prd.types.TimeFrameInformation method) number_of_tof_bins() (pytomography.io.PET.prd.ScannerInformation method) (pytomography.io.PET.prd.types.ScannerInformation method) numpy_to_json() (pytomography.io.PET.prd._ndjson.BoolConverter method) (pytomography.io.PET.prd._ndjson.Complex32Converter method) (pytomography.io.PET.prd._ndjson.Complex64Converter method) (pytomography.io.PET.prd._ndjson.DateConverter method) (pytomography.io.PET.prd._ndjson.DateTimeConverter method) (pytomography.io.PET.prd._ndjson.DynamicNDArrayConverter method) (pytomography.io.PET.prd._ndjson.EnumConverter method) (pytomography.io.PET.prd._ndjson.FixedNDArrayConverter method) (pytomography.io.PET.prd._ndjson.FixedVectorConverter method) (pytomography.io.PET.prd._ndjson.FlagsConverter method) (pytomography.io.PET.prd._ndjson.Float32Converter method) (pytomography.io.PET.prd._ndjson.Float64Converter method) (pytomography.io.PET.prd._ndjson.Int16Converter method) (pytomography.io.PET.prd._ndjson.Int32Converter method) (pytomography.io.PET.prd._ndjson.Int64Converter method) (pytomography.io.PET.prd._ndjson.Int8Converter method) (pytomography.io.PET.prd._ndjson.JsonConverter method) (pytomography.io.PET.prd._ndjson.MapConverter method) (pytomography.io.PET.prd._ndjson.NDArrayConverter method) (pytomography.io.PET.prd._ndjson.OptionalConverter method) (pytomography.io.PET.prd._ndjson.SizeConverter method) (pytomography.io.PET.prd._ndjson.StringConverter method) (pytomography.io.PET.prd._ndjson.TimeConverter method) (pytomography.io.PET.prd._ndjson.UInt16Converter method) (pytomography.io.PET.prd._ndjson.UInt32Converter method) (pytomography.io.PET.prd._ndjson.UInt64Converter method) (pytomography.io.PET.prd._ndjson.UInt8Converter method) (pytomography.io.PET.prd._ndjson.UnionConverter method) (pytomography.io.PET.prd._ndjson.VectorConverter method) (pytomography.io.PET.prd.ndjson._CoincidenceEventConverter method) (pytomography.io.PET.prd.ndjson._DetectorConverter method) (pytomography.io.PET.prd.ndjson._ExamInformationConverter method) (pytomography.io.PET.prd.ndjson._HeaderConverter method) (pytomography.io.PET.prd.ndjson._InstitutionConverter method) (pytomography.io.PET.prd.ndjson._ScannerInformationConverter method) (pytomography.io.PET.prd.ndjson._SubjectConverter method) (pytomography.io.PET.prd.ndjson._TimeBlockConverter method) (pytomography.io.PET.prd.ndjson._TimeFrameInformationConverter method) (pytomography.io.PET.prd.ndjson._TimeIntervalConverter method)

numpy_value (pytomography.io.PET.prd.DateTime property) (pytomography.io.PET.prd.Time property) (pytomography.io.PET.prd.yardl_types.DateTime property) (pytomography.io.PET.prd.yardl_types.Time property)

O

ObjectMeta (class in pytomography.metadata) (class in pytomography.metadata.metadata) open_multifile() (in module pytomography.io.shared) (in module pytomography.io.shared.dicom) OptionalConverter (class in pytomography.io.PET.prd._ndjson) OptionalSerializer (class in pytomography.io.PET.prd._binary) OSEM (class in pytomography.algorithms) (class in pytomography.algorithms.preconditioned_gradient_ascent)

OSMAPOSL (class in pytomography.algorithms) (class in pytomography.algorithms.preconditioned_gradient_ascent) OutOfRangeEnum (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.yardl_types) overall_dtype() (pytomography.io.PET.prd._binary.TypeSerializer method) (pytomography.io.PET.prd._ndjson.JsonConverter method)

P

pad_object() (in module pytomography.utils) (in module pytomography.utils.spatial) pad_object_z() (in module pytomography.utils) (in module pytomography.utils.spatial) pad_proj() (in module pytomography.utils) (in module pytomography.utils.spatial) parse() (pytomography.io.PET.prd.DateTime static method) (pytomography.io.PET.prd.Time static method) (pytomography.io.PET.prd.yardl_types.DateTime static method) (pytomography.io.PET.prd.yardl_types.Time static method) parse_projection_dataset() (in module pytomography.io.SPECT.dicom) PETLMProjMeta (class in pytomography.metadata.PET) (class in pytomography.metadata.PET.petlm_metadata) PETLMSystemMatrix (class in pytomography.projectors.PET) (class in pytomography.projectors.PET.petlm_system_matrix) PETSinogramPolygonProjMeta (class in pytomography.metadata.PET) (class in pytomography.metadata.PET.pet_sinogram_metadata) PETSinogramSystemMatrix (class in pytomography.projectors.PET) (class in pytomography.projectors.PET.pet_sinogram_system_matrix) PETTOFMeta (class in pytomography.metadata.PET) (class in pytomography.metadata.PET.pet_tof_metadata) PGAAMultiBedSPECT (class in pytomography.algorithms) (class in pytomography.algorithms.preconditioned_gradient_ascent) phi0() (pytomography.priors.LogCoshPrior method) (pytomography.priors.nearest_neighbour.LogCoshPrior method) (pytomography.priors.nearest_neighbour.NearestNeighbourPrior method) (pytomography.priors.nearest_neighbour.QuadraticPrior method) (pytomography.priors.nearest_neighbour.RelativeDifferencePrior method) (pytomography.priors.NearestNeighbourPrior method) (pytomography.priors.QuadraticPrior method) (pytomography.priors.RelativeDifferencePrior method) phi1() (pytomography.priors.LogCoshPrior method) (pytomography.priors.nearest_neighbour.LogCoshPrior method) (pytomography.priors.nearest_neighbour.NearestNeighbourPrior method) (pytomography.priors.nearest_neighbour.QuadraticPrior method) (pytomography.priors.nearest_neighbour.RelativeDifferencePrior method) (pytomography.priors.NearestNeighbourPrior method) (pytomography.priors.QuadraticPrior method) (pytomography.priors.RelativeDifferencePrior method) phi2_1() (pytomography.priors.nearest_neighbour.NearestNeighbourPrior method) (pytomography.priors.nearest_neighbour.RelativeDifferencePrior method) (pytomography.priors.NearestNeighbourPrior method) (pytomography.priors.RelativeDifferencePrior method) phi2_2() (pytomography.priors.nearest_neighbour.NearestNeighbourPrior method) (pytomography.priors.nearest_neighbour.RelativeDifferencePrior method) (pytomography.priors.NearestNeighbourPrior method) (pytomography.priors.RelativeDifferencePrior method) photon_energy_after_compton_scatter_511kev() (in module pytomography.utils.sss) PoissonLogLikelihood (class in pytomography.likelihoods) (class in pytomography.likelihoods.poisson_log_likelihood) PrdExperimentReaderBase (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.protocols) PrdExperimentWriterBase (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.protocols) PreconditionedGradientAscentAlgorithm (class in pytomography.algorithms) (class in pytomography.algorithms.preconditioned_gradient_ascent) print_collimator_parameters() (in module pytomography.utils) (in module pytomography.utils.misc) Prior (class in pytomography.priors) (class in pytomography.priors.prior) ProjMeta (class in pytomography.metadata) (class in pytomography.metadata.metadata) prompt_events (pytomography.io.PET.prd.TimeBlock attribute) (pytomography.io.PET.prd.types.TimeBlock attribute) protocol (pytomography.io.PET.prd.ExamInformation attribute) (pytomography.io.PET.prd.types.ExamInformation attribute) ProtocolError, [1] pytomography module pytomography.algorithms module pytomography.algorithms.dip_recon module pytomography.algorithms.fbp module pytomography.algorithms.preconditioned_gradient_ascent module pytomography.callbacks module pytomography.callbacks.callback module pytomography.callbacks.data_saving module pytomography.io module pytomography.io.CT module pytomography.io.CT.attenuation_map module pytomography.io.PET module pytomography.io.PET.clinical module pytomography.io.PET.gate module pytomography.io.PET.petsird module pytomography.io.PET.prd module pytomography.io.PET.prd._binary module pytomography.io.PET.prd._dtypes module pytomography.io.PET.prd._ndjson module pytomography.io.PET.prd.binary module pytomography.io.PET.prd.ndjson module

pytomography.io.PET.prd.protocols module pytomography.io.PET.prd.types module pytomography.io.PET.prd.yardl_types module pytomography.io.PET.shared module pytomography.io.shared module pytomography.io.shared.dicom module pytomography.io.shared.dicom_creation module pytomography.io.shared.interfile module pytomography.io.SPECT module pytomography.io.SPECT.dicom module pytomography.io.SPECT.shared module pytomography.io.SPECT.simind module pytomography.likelihoods module pytomography.likelihoods.likelihood module pytomography.likelihoods.mse_objective module pytomography.likelihoods.poisson_log_likelihood module pytomography.metadata module pytomography.metadata.metadata module pytomography.metadata.PET module pytomography.metadata.PET.pet_sinogram_metadata module pytomography.metadata.PET.pet_tof_metadata module pytomography.metadata.PET.petlm_metadata module pytomography.metadata.SPECT module pytomography.metadata.SPECT.spect_metadata module pytomography.priors module pytomography.priors.nearest_neighbour module pytomography.priors.prior module pytomography.projectors module pytomography.projectors.PET module pytomography.projectors.PET.pet_sinogram_system_matrix module pytomography.projectors.PET.petlm_system_matrix module pytomography.projectors.shared module pytomography.projectors.shared.kem_system_matrix module pytomography.projectors.shared.motion_correction_system_matrix module pytomography.projectors.SPECT module pytomography.projectors.SPECT.spect_system_matrix module pytomography.projectors.system_matrix module pytomography.transforms module pytomography.transforms.shared module pytomography.transforms.shared.filters module pytomography.transforms.shared.kem module pytomography.transforms.shared.motion module pytomography.transforms.shared.spatial module pytomography.transforms.SPECT module pytomography.transforms.SPECT.attenuation module pytomography.transforms.SPECT.psf module pytomography.transforms.transform module pytomography.utils module pytomography.utils.fourier_filters module pytomography.utils.misc module pytomography.utils.nist_data module pytomography.utils.scatter module pytomography.utils.spatial module pytomography.utils.sss module

Q

QuadraticPrior (class in pytomography.priors) (class in pytomography.priors.nearest_neighbour)

R

RampFilter (class in pytomography.utils) (class in pytomography.utils.fourier_filters) randoms_sinogram_to_sinogramTOF() built-in function randoms_sinogram_to_sinogramTOF() (in module pytomography.io.PET.shared) RBIEM (class in pytomography.algorithms) (class in pytomography.algorithms.preconditioned_gradient_ascent) RBIMAP (class in pytomography.algorithms) (class in pytomography.algorithms.preconditioned_gradient_ascent) read() (pytomography.io.PET.prd._binary.BoolSerializer method) (pytomography.io.PET.prd._binary.CodedInputStream method) (pytomography.io.PET.prd._binary.Complex32Serializer method) (pytomography.io.PET.prd._binary.Complex64Serializer method) (pytomography.io.PET.prd._binary.DateSerializer method) (pytomography.io.PET.prd._binary.DateTimeSerializer method) (pytomography.io.PET.prd._binary.DynamicNDArraySerializer method) (pytomography.io.PET.prd._binary.EnumSerializer method) (pytomography.io.PET.prd._binary.FixedNDArraySerializer method) (pytomography.io.PET.prd._binary.FixedVectorSerializer method) (pytomography.io.PET.prd._binary.Float32Serializer method) (pytomography.io.PET.prd._binary.Float64Serializer method) (pytomography.io.PET.prd._binary.Int16Serializer method) (pytomography.io.PET.prd._binary.Int32Serializer method) (pytomography.io.PET.prd._binary.Int64Serializer method) (pytomography.io.PET.prd._binary.Int8Serializer method) (pytomography.io.PET.prd._binary.MapSerializer method) (pytomography.io.PET.prd._binary.NDArraySerializer method) (pytomography.io.PET.prd._binary.NoneSerializer method) (pytomography.io.PET.prd._binary.OptionalSerializer method) (pytomography.io.PET.prd._binary.SizeSerializer method) (pytomography.io.PET.prd._binary.StreamSerializer method) (pytomography.io.PET.prd._binary.StringSerializer method) (pytomography.io.PET.prd._binary.StructSerializer method) (pytomography.io.PET.prd._binary.TimeSerializer method) (pytomography.io.PET.prd._binary.TypeSerializer method) (pytomography.io.PET.prd._binary.UInt16Serializer method) (pytomography.io.PET.prd._binary.UInt32Serializer method) (pytomography.io.PET.prd._binary.UInt64Serializer method) (pytomography.io.PET.prd._binary.UInt8Serializer method) (pytomography.io.PET.prd._binary.UnionSerializer method) (pytomography.io.PET.prd._binary.VectorSerializer method) (pytomography.io.PET.prd.binary._CoincidenceEventSerializer method) (pytomography.io.PET.prd.binary._DetectorSerializer method) (pytomography.io.PET.prd.binary._ExamInformationSerializer method) (pytomography.io.PET.prd.binary._HeaderSerializer method) (pytomography.io.PET.prd.binary._InstitutionSerializer method) (pytomography.io.PET.prd.binary._ScannerInformationSerializer method) (pytomography.io.PET.prd.binary._SubjectSerializer method) (pytomography.io.PET.prd.binary._TimeBlockSerializer method) (pytomography.io.PET.prd.binary._TimeFrameInformationSerializer method) (pytomography.io.PET.prd.binary._TimeIntervalSerializer method) read_byte() (pytomography.io.PET.prd._binary.CodedInputStream method)

read_bytearray() (pytomography.io.PET.prd._binary.CodedInputStream method) read_fixed_int32() (in module pytomography.io.PET.prd._binary) read_header() (pytomography.io.PET.prd.PrdExperimentReaderBase method) (pytomography.io.PET.prd.protocols.PrdExperimentReaderBase method) read_numpy() (pytomography.io.PET.prd._binary.BoolSerializer method) (pytomography.io.PET.prd._binary.Complex32Serializer method) (pytomography.io.PET.prd._binary.Complex64Serializer method) (pytomography.io.PET.prd._binary.DateSerializer method) (pytomography.io.PET.prd._binary.DateTimeSerializer method) (pytomography.io.PET.prd._binary.DynamicNDArraySerializer method) (pytomography.io.PET.prd._binary.EnumSerializer method) (pytomography.io.PET.prd._binary.FixedNDArraySerializer method) (pytomography.io.PET.prd._binary.FixedVectorSerializer method) (pytomography.io.PET.prd._binary.Int16Serializer method) (pytomography.io.PET.prd._binary.Int32Serializer method) (pytomography.io.PET.prd._binary.Int64Serializer method) (pytomography.io.PET.prd._binary.MapSerializer method) (pytomography.io.PET.prd._binary.NDArraySerializer method) (pytomography.io.PET.prd._binary.NoneSerializer method) (pytomography.io.PET.prd._binary.OptionalSerializer method) (pytomography.io.PET.prd._binary.RecordSerializer method) (pytomography.io.PET.prd._binary.SizeSerializer method) (pytomography.io.PET.prd._binary.StreamSerializer method) (pytomography.io.PET.prd._binary.StringSerializer method) (pytomography.io.PET.prd._binary.StructSerializer method) (pytomography.io.PET.prd._binary.TimeSerializer method) (pytomography.io.PET.prd._binary.TypeSerializer method) (pytomography.io.PET.prd._binary.UInt16Serializer method) (pytomography.io.PET.prd._binary.UInt32Serializer method) (pytomography.io.PET.prd._binary.UInt64Serializer method) (pytomography.io.PET.prd._binary.UnionSerializer method) (pytomography.io.PET.prd._binary.VectorSerializer method) read_signed_varint() (pytomography.io.PET.prd._binary.CodedInputStream method) read_time_blocks() (pytomography.io.PET.prd.PrdExperimentReaderBase method) (pytomography.io.PET.prd.protocols.PrdExperimentReaderBase method) read_unsigned_varint() (pytomography.io.PET.prd._binary.CodedInputStream method) read_view() (pytomography.io.PET.prd._binary.CodedInputStream method) RecordSerializer (class in pytomography.io.PET.prd._binary) relation_dict (in module pytomography.io.SPECT.simind) RelativeDifferencePrior (class in pytomography.priors) (class in pytomography.priors.nearest_neighbour) remove_events_out_of_bounds() (in module pytomography.io.PET.gate) rev_cumsum() (in module pytomography.utils) (in module pytomography.utils.misc) rotate_detector_z() (in module pytomography.utils) (in module pytomography.utils.spatial) RotationTransform (class in pytomography.transforms.shared) (class in pytomography.transforms.shared.spatial) run() (pytomography.callbacks.Callback method) (pytomography.callbacks.callback.Callback method) (pytomography.callbacks.data_saving.DataStorageCallback method) (pytomography.callbacks.DataStorageCallback method)

S

SART (class in pytomography.algorithms) (class in pytomography.algorithms.preconditioned_gradient_ascent) SARTWeightedNegativeMSELikelihood (class in pytomography.likelihoods) (class in pytomography.likelihoods.mse_objective) save_dcm() (in module pytomography.io.SPECT.dicom) scale_estimated_scatter() (in module pytomography.utils.sss) scanner (pytomography.io.PET.prd.Header attribute) (pytomography.io.PET.prd.types.Header attribute) ScannerInformation (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.types) schema (pytomography.io.PET.prd.PrdExperimentReaderBase attribute) (pytomography.io.PET.prd.PrdExperimentWriterBase attribute) (pytomography.io.PET.prd.protocols.PrdExperimentReaderBase attribute) (pytomography.io.PET.prd.protocols.PrdExperimentWriterBase attribute) set_beta_scale() (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) set_device() (in module pytomography) set_dtype() (in module pytomography) set_n_subsets() (pytomography.projectors.ExtendedSystemMatrix method) (pytomography.projectors.PET.pet_sinogram_system_matrix.PETSinogramSystemMatrix method) (pytomography.projectors.PET.petlm_system_matrix.PETLMSystemMatrix method) (pytomography.projectors.PET.PETLMSystemMatrix method) (pytomography.projectors.PET.PETSinogramSystemMatrix method) (pytomography.projectors.SPECT.spect_system_matrix.SPECTSystemMatrix method) (pytomography.projectors.SPECT.SPECTSystemMatrix method) (pytomography.projectors.system_matrix.ExtendedSystemMatrix method) set_object() (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) set_object_meta() (pytomography.priors.AnatomyNeighbourWeight method) (pytomography.priors.nearest_neighbour.AnatomyNeighbourWeight method) (pytomography.priors.nearest_neighbour.NearestNeighbourPrior method) (pytomography.priors.nearest_neighbour.NeighbourWeight method) (pytomography.priors.nearest_neighbour.TopNAnatomyNeighbourWeight method) (pytomography.priors.NearestNeighbourPrior method) (pytomography.priors.NeighbourWeight method) (pytomography.priors.Prior method) (pytomography.priors.prior.Prior method) (pytomography.priors.TopNAnatomyNeighbourWeight method) set_verbose() (in module pytomography) sinogram_coordinates() built-in function sinogram_coordinates() (in module pytomography.io.PET.shared) sinogram_to_listmode() built-in function sinogram_to_listmode() (in module pytomography.io.PET.shared) sinogram_to_spatial() built-in function sinogram_to_spatial() (in module pytomography.io.PET.shared) Size (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) size_converter (in module pytomography.io.PET.prd._ndjson)

size_serializer (in module pytomography.io.PET.prd._binary) SizeConverter (class in pytomography.io.PET.prd._ndjson) SizeSerializer (class in pytomography.io.PET.prd._binary) smooth_randoms_sinogram() built-in function smooth_randoms_sinogram() (in module pytomography.io.PET.shared) SPECTAttenuationTransform (class in pytomography.transforms.SPECT) (class in pytomography.transforms.SPECT.attenuation) SPECTCompleteSystemMatrix (class in pytomography.projectors.SPECT) (class in pytomography.projectors.SPECT.spect_system_matrix) SPECTObjectMeta (class in pytomography.metadata.SPECT) (class in pytomography.metadata.SPECT.spect_metadata) SPECTProjMeta (class in pytomography.metadata.SPECT) (class in pytomography.metadata.SPECT.spect_metadata) SPECTPSFMeta (class in pytomography.metadata.SPECT) (class in pytomography.metadata.SPECT.spect_metadata) SPECTPSFTransform (class in pytomography.transforms.SPECT) (class in pytomography.transforms.SPECT.psf) SPECTSystemMatrix (class in pytomography.projectors.SPECT) (class in pytomography.projectors.SPECT.spect_system_matrix) start (pytomography.io.PET.prd.TimeInterval attribute) (pytomography.io.PET.prd.types.TimeInterval attribute) start_of_acquisition (pytomography.io.PET.prd.ExamInformation attribute) (pytomography.io.PET.prd.types.ExamInformation attribute) stitch_multibed() (in module pytomography.io.SPECT.dicom) stop (pytomography.io.PET.prd.TimeInterval attribute) (pytomography.io.PET.prd.types.TimeInterval attribute) StreamSerializer (class in pytomography.io.PET.prd._binary) string_converter (in module pytomography.io.PET.prd._ndjson) string_serializer (in module pytomography.io.PET.prd._binary) StringConverter (class in pytomography.io.PET.prd._ndjson) StringSerializer (class in pytomography.io.PET.prd._binary) struct_format_str() (pytomography.io.PET.prd._binary.StructSerializer method) (pytomography.io.PET.prd._binary.TypeSerializer method) StructSerializer (class in pytomography.io.PET.prd._binary) structural_equal() (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) Subject (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.types) subject (pytomography.io.PET.prd.ExamInformation attribute) (pytomography.io.PET.prd.types.ExamInformation attribute) subsample_amap() (in module pytomography.io.SPECT) (in module pytomography.io.SPECT.shared) subsample_projections() (in module pytomography.io.SPECT.shared) subsample_projections_and_modify_metadata() (in module pytomography.io.SPECT) (in module pytomography.io.SPECT.shared) supports_none() (pytomography.io.PET.prd._ndjson.JsonConverter method) (pytomography.io.PET.prd._ndjson.OptionalConverter method) (pytomography.io.PET.prd._ndjson.UnionConverter method) SystemMatrix (class in pytomography.projectors) (class in pytomography.projectors.system_matrix)

T

T (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) (pytomography.io.PET.prd.PrdExperimentReaderBase attribute) (pytomography.io.PET.prd.protocols.PrdExperimentReaderBase attribute) T_NP (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) tag (pytomography.io.PET.prd.UnionCase attribute) (pytomography.io.PET.prd.yardl_types.UnionCase attribute) TEnum (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) TFlag (in module pytomography.io.PET.prd._ndjson) Time (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.yardl_types) time_converter (in module pytomography.io.PET.prd._ndjson) time_frames (pytomography.io.PET.prd.TimeFrameInformation attribute) (pytomography.io.PET.prd.types.TimeFrameInformation attribute) time_serializer (in module pytomography.io.PET.prd._binary) TimeBlock (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.types) TimeConverter (class in pytomography.io.PET.prd._ndjson) TIMEDELTA_NANOSECONDS_DTYPE (in module pytomography.io.PET.prd._binary) TimeFrameInformation (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.types) TimeInterval (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.types) TimeSerializer (class in pytomography.io.PET.prd._binary) TKey (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) TKey_NP (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) to_datetime() (pytomography.io.PET.prd.DateTime method) (pytomography.io.PET.prd.yardl_types.DateTime method) to_json() (pytomography.io.PET.prd._ndjson.BoolConverter method) (pytomography.io.PET.prd._ndjson.Complex32Converter method) (pytomography.io.PET.prd._ndjson.Complex64Converter method) (pytomography.io.PET.prd._ndjson.DateConverter method) (pytomography.io.PET.prd._ndjson.DateTimeConverter method) (pytomography.io.PET.prd._ndjson.DynamicNDArrayConverter method) (pytomography.io.PET.prd._ndjson.EnumConverter method) (pytomography.io.PET.prd._ndjson.FixedNDArrayConverter method) (pytomography.io.PET.prd._ndjson.FixedVectorConverter method) (pytomography.io.PET.prd._ndjson.FlagsConverter method) (pytomography.io.PET.prd._ndjson.Float32Converter method) (pytomography.io.PET.prd._ndjson.Float64Converter method) (pytomography.io.PET.prd._ndjson.Int16Converter method) (pytomography.io.PET.prd._ndjson.Int32Converter method) (pytomography.io.PET.prd._ndjson.Int64Converter method) (pytomography.io.PET.prd._ndjson.Int8Converter method) (pytomography.io.PET.prd._ndjson.JsonConverter method) (pytomography.io.PET.prd._ndjson.MapConverter method) (pytomography.io.PET.prd._ndjson.NDArrayConverter method) (pytomography.io.PET.prd._ndjson.OptionalConverter method) (pytomography.io.PET.prd._ndjson.SizeConverter method) (pytomography.io.PET.prd._ndjson.StringConverter method) (pytomography.io.PET.prd._ndjson.TimeConverter method) (pytomography.io.PET.prd._ndjson.UInt16Converter method) (pytomography.io.PET.prd._ndjson.UInt32Converter method) (pytomography.io.PET.prd._ndjson.UInt64Converter method) (pytomography.io.PET.prd._ndjson.UInt8Converter method) (pytomography.io.PET.prd._ndjson.UnionConverter method) (pytomography.io.PET.prd._ndjson.VectorConverter method) (pytomography.io.PET.prd.ndjson._CoincidenceEventConverter method) (pytomography.io.PET.prd.ndjson._DetectorConverter method) (pytomography.io.PET.prd.ndjson._ExamInformationConverter method) (pytomography.io.PET.prd.ndjson._HeaderConverter method) (pytomography.io.PET.prd.ndjson._InstitutionConverter method) (pytomography.io.PET.prd.ndjson._ScannerInformationConverter method) (pytomography.io.PET.prd.ndjson._SubjectConverter method) (pytomography.io.PET.prd.ndjson._TimeBlockConverter method) (pytomography.io.PET.prd.ndjson._TimeFrameInformationConverter method) (pytomography.io.PET.prd.ndjson._TimeIntervalConverter method)

tof_bin_edges (pytomography.io.PET.prd.ScannerInformation attribute) (pytomography.io.PET.prd.types.ScannerInformation attribute) tof_efficiency() (in module pytomography.utils.sss) tof_idx (pytomography.io.PET.prd.CoincidenceEvent attribute) (pytomography.io.PET.prd.types.CoincidenceEvent attribute) tof_resolution (pytomography.io.PET.prd.ScannerInformation attribute) (pytomography.io.PET.prd.types.ScannerInformation attribute) TopNAnatomyNeighbourWeight (class in pytomography.priors) (class in pytomography.priors.nearest_neighbour) total_compton_cross_section() (in module pytomography.utils.sss) Transform (class in pytomography.transforms) (class in pytomography.transforms.transform) TValue (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) TValue_NP (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) TypeSerializer (class in pytomography.io.PET.prd._binary)

U

UInt16 (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) uint16_converter (in module pytomography.io.PET.prd._ndjson) UINT16_MAX (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) uint16_serializer (in module pytomography.io.PET.prd._binary) UInt16Converter (class in pytomography.io.PET.prd._ndjson) UInt16Serializer (class in pytomography.io.PET.prd._binary) UInt32 (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) uint32_converter (in module pytomography.io.PET.prd._ndjson) UINT32_MAX (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) uint32_serializer (in module pytomography.io.PET.prd._binary) UInt32Converter (class in pytomography.io.PET.prd._ndjson) UInt32Serializer (class in pytomography.io.PET.prd._binary) UInt64 (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) uint64_converter (in module pytomography.io.PET.prd._ndjson) UINT64_MAX (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson)

uint64_serializer (in module pytomography.io.PET.prd._binary) UInt64Converter (class in pytomography.io.PET.prd._ndjson) UInt64Serializer (class in pytomography.io.PET.prd._binary) UInt8 (in module pytomography.io.PET.prd) (in module pytomography.io.PET.prd.yardl_types) uint8_converter (in module pytomography.io.PET.prd._ndjson) UINT8_MAX (in module pytomography.io.PET.prd._binary) (in module pytomography.io.PET.prd._ndjson) uint8_serializer (in module pytomography.io.PET.prd._binary) UInt8Converter (class in pytomography.io.PET.prd._ndjson) UInt8Serializer (class in pytomography.io.PET.prd._binary) UnionCase (class in pytomography.io.PET.prd) (class in pytomography.io.PET.prd.yardl_types) UnionCaseProtocol (class in pytomography.io.PET.prd._binary) UnionConverter (class in pytomography.io.PET.prd._ndjson) UnionSerializer (class in pytomography.io.PET.prd._binary) unpad_object() (in module pytomography.utils) (in module pytomography.utils.spatial) unpad_object_z() (in module pytomography.utils) (in module pytomography.utils.spatial) unpad_proj() (in module pytomography.utils) (in module pytomography.utils.spatial)

V

value (pytomography.io.PET.prd._binary.UnionCaseProtocol attribute) VectorConverter (class in pytomography.io.PET.prd._ndjson)

VectorSerializer (class in pytomography.io.PET.prd._binary) verbose (in module pytomography)

W

write() (pytomography.io.PET.prd._binary.CodedOutputStream method) (pytomography.io.PET.prd._binary.Complex32Serializer method) (pytomography.io.PET.prd._binary.Complex64Serializer method) (pytomography.io.PET.prd._binary.DateSerializer method) (pytomography.io.PET.prd._binary.DateTimeSerializer method) (pytomography.io.PET.prd._binary.DynamicNDArraySerializer method) (pytomography.io.PET.prd._binary.EnumSerializer method) (pytomography.io.PET.prd._binary.FixedNDArraySerializer method) (pytomography.io.PET.prd._binary.FixedVectorSerializer method) (pytomography.io.PET.prd._binary.Int16Serializer method) (pytomography.io.PET.prd._binary.Int32Serializer method) (pytomography.io.PET.prd._binary.Int64Serializer method) (pytomography.io.PET.prd._binary.MapSerializer method) (pytomography.io.PET.prd._binary.NDArraySerializer method) (pytomography.io.PET.prd._binary.NoneSerializer method) (pytomography.io.PET.prd._binary.OptionalSerializer method) (pytomography.io.PET.prd._binary.SizeSerializer method) (pytomography.io.PET.prd._binary.StreamSerializer method) (pytomography.io.PET.prd._binary.StringSerializer method) (pytomography.io.PET.prd._binary.StructSerializer method) (pytomography.io.PET.prd._binary.TimeSerializer method) (pytomography.io.PET.prd._binary.TypeSerializer method) (pytomography.io.PET.prd._binary.UInt16Serializer method) (pytomography.io.PET.prd._binary.UInt32Serializer method) (pytomography.io.PET.prd._binary.UInt64Serializer method) (pytomography.io.PET.prd._binary.UnionSerializer method) (pytomography.io.PET.prd._binary.VectorSerializer method) (pytomography.io.PET.prd.binary._CoincidenceEventSerializer method) (pytomography.io.PET.prd.binary._DetectorSerializer method) (pytomography.io.PET.prd.binary._ExamInformationSerializer method) (pytomography.io.PET.prd.binary._HeaderSerializer method) (pytomography.io.PET.prd.binary._InstitutionSerializer method) (pytomography.io.PET.prd.binary._ScannerInformationSerializer method) (pytomography.io.PET.prd.binary._SubjectSerializer method) (pytomography.io.PET.prd.binary._TimeBlockSerializer method) (pytomography.io.PET.prd.binary._TimeFrameInformationSerializer method) (pytomography.io.PET.prd.binary._TimeIntervalSerializer method) write_byte_no_check() (pytomography.io.PET.prd._binary.CodedOutputStream method) write_bytes() (pytomography.io.PET.prd._binary.CodedOutputStream method) write_bytes_directly() (pytomography.io.PET.prd._binary.CodedOutputStream method)

write_fixed_int32() (in module pytomography.io.PET.prd._binary) write_header() (pytomography.io.PET.prd.PrdExperimentWriterBase method) (pytomography.io.PET.prd.protocols.PrdExperimentWriterBase method) write_numpy() (pytomography.io.PET.prd._binary.DateSerializer method) (pytomography.io.PET.prd._binary.DateTimeSerializer method) (pytomography.io.PET.prd._binary.DynamicNDArraySerializer method) (pytomography.io.PET.prd._binary.EnumSerializer method) (pytomography.io.PET.prd._binary.FixedNDArraySerializer method) (pytomography.io.PET.prd._binary.FixedVectorSerializer method) (pytomography.io.PET.prd._binary.Int16Serializer method) (pytomography.io.PET.prd._binary.Int32Serializer method) (pytomography.io.PET.prd._binary.Int64Serializer method) (pytomography.io.PET.prd._binary.MapSerializer method) (pytomography.io.PET.prd._binary.NDArraySerializer method) (pytomography.io.PET.prd._binary.NoneSerializer method) (pytomography.io.PET.prd._binary.OptionalSerializer method) (pytomography.io.PET.prd._binary.SizeSerializer method) (pytomography.io.PET.prd._binary.StreamSerializer method) (pytomography.io.PET.prd._binary.StringSerializer method) (pytomography.io.PET.prd._binary.StructSerializer method) (pytomography.io.PET.prd._binary.TimeSerializer method) (pytomography.io.PET.prd._binary.TypeSerializer method) (pytomography.io.PET.prd._binary.UInt16Serializer method) (pytomography.io.PET.prd._binary.UInt32Serializer method) (pytomography.io.PET.prd._binary.UInt64Serializer method) (pytomography.io.PET.prd._binary.UnionSerializer method) (pytomography.io.PET.prd._binary.VectorSerializer method) (pytomography.io.PET.prd.binary._CoincidenceEventSerializer method) (pytomography.io.PET.prd.binary._DetectorSerializer method) (pytomography.io.PET.prd.binary._ExamInformationSerializer method) (pytomography.io.PET.prd.binary._HeaderSerializer method) (pytomography.io.PET.prd.binary._InstitutionSerializer method) (pytomography.io.PET.prd.binary._ScannerInformationSerializer method) (pytomography.io.PET.prd.binary._SubjectSerializer method) (pytomography.io.PET.prd.binary._TimeBlockSerializer method) (pytomography.io.PET.prd.binary._TimeFrameInformationSerializer method) (pytomography.io.PET.prd.binary._TimeIntervalSerializer method) write_signed_varint() (pytomography.io.PET.prd._binary.CodedOutputStream method) write_time_blocks() (pytomography.io.PET.prd.PrdExperimentWriterBase method) (pytomography.io.PET.prd.protocols.PrdExperimentWriterBase method) write_unsigned_varint() (pytomography.io.PET.prd._binary.CodedOutputStream method)

X

x (pytomography.io.PET.prd.Detector attribute) (pytomography.io.PET.prd.types.Detector attribute)

Y

y (pytomography.io.PET.prd.Detector attribute) (pytomography.io.PET.prd.types.Detector attribute)

Z

z (pytomography.io.PET.prd.Detector attribute) (pytomography.io.PET.prd.types.Detector attribute)

zigzag_decode() (pytomography.io.PET.prd._binary.CodedInputStream method) zigzag_encode() (pytomography.io.PET.prd._binary.CodedOutputStream method)